Computation in Cells Workshop: Proceedings Contents

An EPSRC Emergent Computing Workshop

17-18 April 2000

University of Hertfordshire, UK

Computation in Cells: Proceedings of an EPSRC Emerging Computing Paradigms Workshop
Bolouri, Hamid & Paton, Raymond C (Editors),
Dept. of Computer Science Technical Report No. 345,
University of Hertfordshire, UK, April 2000

Contents of the Proceedings

Preface	v
Stochastic Models of Cell Signalling Dennis Bray	1
Regulation of Intercellular Fluxes by Gap Junctions Steve Baigent	3
Robustness and Feedback Control in Biological Signal Transduction Networks Tau-Mu Yi	9
Jarnac: An Interactive Metabolic Systems Language Herbert Sauro	11
Using DBsolve for Creating and Analyzing Whole Cell Models Igor Goryanin	19
Spatial Registration of in situ Gene Expression Data Ekaterina Myasnikova, Anastasia Samsonova, Maria Samsonova and John Reinitz	21
Protein Domain Evolution as a Parallel-Distributed Process Sylvia Nagl	27
The Many Faces of a Biological Switch Upinder Bhalla	33
Interaction of Synaptic Inputs on Purkinje Cells Fidel Santamaria and James Bower	37
Mitotic Clock: How do Telomeres Tick? Maria Blair	43
Bifurcation Analysis of a Model of the Embryonic Cell Cycle in Xenopus Mark Borisuk	45
How do Cells Decide to Replicate Their DNA? Baltazar Aguda	47
Qualitative Analysis of Gene Networks Denis Thieffry	51
Fuzzy Relational Biology: A Factor-Space Approach to Genome Analysis Olaf Wolkenhauer and Robert Babuska	53
Bioinformatics of Microarray Gene Expression Data Alan Robinson	59
Tools for Visualisation of Genetic Networks Structure and Dynamics Maria Samsonova, Vassily Serov and Anastasia Trushkina	61
Human-Competitive Machine Intelligence by Means of Genetic Programming John Koza	67
Future of Computational Molecular Biology in the Pharmaceuticals Industry Charlie Hodgman	69
Axioms for Biological Complexity and Mathematically Rigorous Measures of Computational Capacity Chrystopher Nehaniv and John Rhodes	71
Selection and Coexistence by Controlling Range of Competition Valery Tereshko and Nigel Allinson	77
Topological Motifs for Drug Design David Whitley and Martyn Ford	83
Information Processing in the Microtuble B8-Lattice Robert Campbell	89

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An EPSRC Emergent Computing Workshop 17-18 April 2000 University of Hertfordshire, UK

An EPSRC Emergent Computing Workshop

17-18 April 2000

University of Hertfordshire, UK